#NEXUS

BEGIN TREES;

Tree speceiesTree = ((((a,b),c),d),e);
Tree geneTree1 = ((((a::.5,b::.5)::.5,c::.5)::.5,d::.5)::.5,e::.5)::.5;
Tree geneTree2 = ((a::.5,b::.5)::.5,((c::.5,e::.5)::.5,d::.5)::.5)::.5;
Tree geneTree3 = ((a::.5,c::.5)::.5,((b::.5,e::.5)::.5,d::.5)::.5)::.5;

END;


BEGIN PHYLONET;

DeepCoalCount_Tree {speceiesTree} (geneTree1, geneTree2, geneTree3) -b .5;

END;
===

DeepCoalCount_Tree {speceiesTree} (geneTree1, geneTree2, geneTree3) -b .5
Species_Tree#1 = ((((a:0.0,b:0.0):1.0,c:0.0):2.0,d:0.0):4.0,e:0.0):0.0;
Total number of extra lineages: 7.0
===
